Display MS Metadata - Revision history

Laschp at 14:22, 27 March 2025

2025-03-27T14:22:56Z

← Older revision		Revision as of 16:22, 27 March 2025
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	The function ''display MS metadata'' (aka ''display spectra entries'') is available from the ''View'' ~~pulldown~~ menu and allows users to retrieve spectral metadata stored in the MS data files. The requested metadata information will be displayed in the command line window of MicrobeMS. The output of the command line window is stored per default in a logfile (''logfile.txt'', see [[The Log-File (logfile.txt)\|the log-file]] for details).<br>   <br>		The function ''display MS metadata'' (aka ''display spectra entries'') is available from the ''View'' pull down menu and allows users to retrieve spectral metadata stored in the MS data files. The requested metadata information will be displayed in the command line window of MicrobeMS. The output of the command line window is stored per default in a logfile (''logfile.txt'', see [[The Log-File (logfile.txt)\|the log-file]] for details).<br>   <br>

	To retrieve the metadata select first the respective mass spectra in the ~~listbox~~ at the top left corner (the ~~listbox~~ is labeled by ''MicrobeMS spectra ID`s''). To select multiple spectra hold the <shift> key while selecting. Choose then ''display MS metadata'' → ''option #x'' from the ''View'' ~~pulldown~~ menu. ''Option #x'' denotes options of specific metadata fields. In MicrobeMS version 0.78, the following options are offered: <br>   <br>		To retrieve the metadata select first the respective mass spectra in the list box at the top left corner (the list box is labeled by ''MicrobeMS spectra ID`s''). To select multiple spectra hold the <shift> key while selecting. Choose then ''display MS metadata'' → ''option #x'' from the ''View'' pull down menu. ''Option #x'' denotes options of specific metadata fields. In MicrobeMS version 0.78, the following options are offered: <br>   <br>
	<ul>		<ul>
	* '''short''' - short output of the genus / species / strain information (GEN, SPE, STR)		* '''short''' - short output of the genus / species / strain information (GEN, SPE, STR)
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	* '''complete''' - the complete metadata (all fields, excl. laser power, LAS)		* '''complete''' - the complete metadata (all fields, excl. laser power, LAS)
	* '''type''' - genus / species / strain information plus the strain type info (TYP)		* '''type''' - genus / species / strain information plus the strain type info (TYP)
	* '''tax id''' (species) - genus / species / strain information plus the ~~uniprot~~ species id (UID)		* '''tax id''' (species) - genus / species / strain information plus the Uniprot species id (UID)
	* '''tax id''' (strain) - genus / species / strain information plus the ~~uniprot~~ strain id (UIE)		* '''tax id''' (strain) - genus / species / strain information plus the Uniprot strain id (UIE)
	* '''growth time''' - genus / species / strain information plus the growth time (GTI)		* '''growth time''' - genus / species / strain information plus the growth time (GTI)
	* '''growth temperature''' - genus / species / strain information plus the growth temperature (TEM)		* '''growth temperature''' - genus / species / strain information plus the growth temperature (TEM)

Laschp at 14:21, 27 March 2025

2025-03-27T14:21:42Z

← Older revision		Revision as of 16:21, 27 March 2025
Line 1:		Line 1:
	The function ''display MS metadata'' (aka ''display spectra entries'') is available from the ''View'' pulldown menu and allows users to retrieve spectral metadata stored in the MS data files. The requested metadata information will be displayed in the command line window of MicrobeMS. The output of the command line window is stored per default in a logfile (''logfile.txt'', see [[The Log-File (logfile.txt)\|the log-file]] for details).<br>   <br>		The function ''display MS metadata'' (aka ''display spectra entries'') is available from the ''View'' pulldown menu and allows users to retrieve spectral metadata stored in the MS data files. The requested metadata information will be displayed in the command line window of MicrobeMS. The output of the command line window is stored per default in a logfile (''logfile.txt'', see [[The Log-File (logfile.txt)\|the log-file]] for details).<br>   <br>

	To retrieve the metadata select first the respective mass spectra in the listbox at the top left corner (the listbox is labeled by ''MicrobeMS spectra ID`s''). To select multiple spectra hold the <shift> key while selecting. Choose then ''display MS metadata'' ~~-->~~ ''option #x'' from the ''View'' pulldown menu. ''Option #x'' denotes options of specific metadata fields. In MicrobeMS version 0.78, the following options are offered: <br>   <br>		To retrieve the metadata select first the respective mass spectra in the listbox at the top left corner (the listbox is labeled by ''MicrobeMS spectra ID`s''). To select multiple spectra hold the <shift> key while selecting. Choose then ''display MS metadata'' → ''option #x'' from the ''View'' pulldown menu. ''Option #x'' denotes options of specific metadata fields. In MicrobeMS version 0.78, the following options are offered: <br>   <br>
	<ul>		<ul>
	* '''short''' - short output of the genus / species / strain information (GEN, SPE, STR)		* '''short''' - short output of the genus / species / strain information (GEN, SPE, STR)

Laschp at 18:27, 15 December 2024

2024-12-15T18:27:49Z

← Older revision		Revision as of 20:27, 15 December 2024
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	</ul>		</ul>
	<br>		<br>
	MS ~~metadate~~ are also accessible through the context menu of the MS spectra ~~plots~~. Simply click with the right mouse button on the spectrum of interest.		MS metadata are also accessible through the context menu of the mass spectra given in the main user interface. Simply click with the right mouse button on the spectrum of interest.

Laschp: Created page with "The function ''display MS metadata'' (aka ''display spectra entries'') is available from the ''View'' pulldown menu and allows users to retrieve spectral metadata stored in the MS data files. The requested metadata information will be displayed in the command line window of MicrobeMS. The output of the command line window is stored per default in a logfile (''logfile.txt'', see the log-file for details).

To retrieve the met..."

2023-03-18T09:28:12Z

Created page with "The function ''display MS metadata'' (aka ''display spectra entries'') is available from the ''View'' pulldown menu and allows users to retrieve spectral metadata stored in the MS data files. The requested metadata information will be displayed in the command line window of MicrobeMS. The output of the command line window is stored per default in a logfile (''logfile.txt'', see the log-file for details). To retrieve the met..."

New page

The function ''display MS metadata'' (aka ''display spectra entries'') is available from the ''View'' pulldown menu and allows users to retrieve spectral metadata stored in the MS data files. The requested metadata information will be displayed in the command line window of MicrobeMS. The output of the command line window is stored per default in a logfile (''logfile.txt'', see [[The Log-File (logfile.txt)|the log-file]] for details).   

To retrieve the metadata select first the respective mass spectra in the listbox at the top left corner (the listbox is labeled by ''MicrobeMS spectra ID`s''). To select multiple spectra hold the <shift> key while selecting. Choose then ''display MS metadata'' --> ''option #x'' from the ''View'' pulldown menu. ''Option #x'' denotes options of specific metadata fields. In MicrobeMS version 0.78, the following options are offered:   
<ul>
* '''short''' - short output of the genus / species / strain information (GEN, SPE, STR)
* '''incl class ass''' - genus / species / strain information plus the class assignment (CLS)
* '''incl date''' - file id plus genus / species / strain information plus the measurement date and time (TIM)
* '''complete''' - the complete metadata (all fields, excl. laser power, LAS)
* '''type''' - genus / species / strain information plus the strain type info (TYP)
* '''tax id''' (species) - genus / species / strain information plus the uniprot species id (UID)
* '''tax id''' (strain) - genus / species / strain information plus the uniprot strain id (UIE)
* '''growth time''' - genus / species / strain information plus the growth time (GTI)
* '''growth temperature''' - genus / species / strain information plus the growth temperature (TEM)
* '''growth conditions''' - - genus / species / strain information plus the growth conditions - cultivation under aerobic or anaerobic conditions (AIR)
* '''growth medium''' - genus / species / strain information plus the growth medium (MED)
* '''sample treatment''' - genus / species / strain information plus the sample treatment information (TRT)
* '''spores''' - genus / species / strain information plus spore formers (YES or NO) (SPO)
* '''concentration''' - genus / species / strain information plus concentration (CON)
* '''extra info''' - genus / species / strain information plus extra info (EXT)
* '''laser power''' - genus / species / strain information plus laser power (LAS)
* '''calibration standard''' - genus / species / strain information plus calibration standard (CAL)
* '''measurement method''' - genus / species / strain information plus measurement method (MET)
* '''customer''' - - genus / species / strain information plus the customer info (CUS)
* '''measurement date/time''' - genus / species / strain information plus the measurement date and time (TIM)
* '''path to MS file''' - genus / species / strain information plus the full path to the MS data file ''fid'' (PTH)
* '''custom format I''' - custom format I used for documentation of MS databases
* '''custom format II''' - custom format II used for documentation of MS databases
</ul>
 
MS metadate are also accessible through the context menu of the MS spectra plots. Simply click with the right mouse button on the spectrum of interest.